= Publications =

Please email [mailto:jason.roberts@duke.edu] if you know of something that is not listed here. If you use MGET in your own published work, we kindly request that you cite it (see [../#CitationInstructions Citation Instructions]) and let us know.

== Publications related to the development of MGET and tools that have been incorporated into it ==

Roberts, J.J., B.D. Best, D.C. Dunn, E.A. Treml, and P.N. Halpin (2010). Marine Geospatial Ecology Tools: An integrated framework for ecological geoprocessing with ArcGIS, Python, R, MATLAB, and C++. ''Environmental Modelling & Software 25:'' 1197-1207. [http://dx.doi.org/10.1016/j.envsoft.2010.03.029 doi:10.1016/j.envsoft.2010.03.029].

Dunn, D.C., K. Stewart, R.H. Bjorkland, M. Haughton, S. Singh-Renton, R. Lewison, L. Thorne, and P.N. Halpin (2009). A regional analysis of coastal and domestic fishing effort in the wider Caribbean. ''Fisheries Research 102:'' 60-68. [http://dx.doi.org/10.1016/j.fishres.2009.10.010 doi:10.1016/j.fishres.2009.10.010].

Treml, E.A., P.N. Halpin, D.L. Urban, and L.F. Pratson (2008). Modeling population connectivity by ocean currents, a graph-theoretic approach for marine conservation. ''Landscape Ecology 23'': 19-36. [http://dx.doi.org/10.1007/s10980-007-9138-y doi:10.1007/s10980-007-9138-y].

== Publications describing tools planned for incorporation into MGET ==

Treml, E.A., J. Roberts, Y. Chao, P.N. Halpin, H.P. Possingham, and C. Riginos (accepted). Reproductive output and duration of the pelagic larval stage determine seascape-wide connectivity of marine populations. ''Integrative and Comparative Biology''.

Dunn, D.C. and P.N. Halpin (2009). Filling a marine spatial planning data gap: rugosity as a mesoscale proxy for hard-bottom habitat and marine biodiversity. ''Marine Ecology Progress Series 377:'' 1-11. [http://www.int-res.com/articles/feature/m377p001.pdf PDF]

Dunn, D.C., C.Y. Kot, and P.N. Halpin (2008). A comparison of methods to spatially represent pelagic longline fishing effort in catch and bycatch studies. ''Fisheries Research 92:'' 268–276. [http://dx.doi.org/10.1016/j.fishres.2008.01.006 doi:10.1016/j.fishres.2008.01.006].

== Peer-reviewed studies that used MGET (that we know about) ==

'''Forthcoming'''

Dellabianca, N., Scioscia, G., Schiavini, A., and Raya Rey, A. (accepted). Occurrence of hourglass dolphin (Lagenorhynchus cruciger) and habitat characteristics along the Patagonian Shelf and the Atlantic Ocean sector of the Southern Ocean. Polar Biology. [http://dx.doi.org/10.1007/s00300-012-1217-0 doi:10.1007/s00300-012-1217-0].

Treml, E.A. and P.N. Halpin (accepted). Marine population connectivity identifies ecological neighbors for conservation planning in the Coral Triangle. ''Conservation Letters.'' [http://dx.doi.org/10.1111/j.1755-263X.2012.00260.x doi:10.1111/j.1755-263X.2012.00260.x]

'''2012'''

Alonso, H., J.P. Granaderio, V.H. Paiva, A.S. Dias, J.A. Ramos, and P. Catry (2012). Parent–offspring dietary segregation of Cory’s shearwaters breeding in contrasting environments. ''Marine Biology 159:'' 1197-1207. [http://dx.doi.org/10.1007/s00227-012-1900-2 doi:10.1007/s00227-012-1900-2].

Dalla Rosa, L., J.K.B. Ford, and A.W. Trites (2012). Distribution and relative abundance of humpback whales in relation to environmental variables in coastal British Columbia and adjacent waters. ''Continental Shelf Research 36:'' 89-104. [http://dx.doi.org/10.1016/j.csr.2012.01.017 doi:10.1016/j.csr.2012.01.017].

Krigsman, L.M., M.M. Yoklavich, E.J. Dick, and G.R. Cochrane (2012). Models and maps: predicting the distribution of corals and other benthic macro-invertebrates in shelf habitats. ''Ecosphere 3(1):'' 3. [http://dx.doi.org/10.1890/ES11-00295.1 doi:10.1890/ES11-00295.1].

!McKinney, J.A., Hoffmayer, E.R., Wu, W., Fulford, R., and Hendon, J.M (2012). Feeding habitat of the whale shark ''Rhincodon typus'' in the northern Gulf of Mexico determined using species distribution modelling. ''Marine Ecology Progress Series 458:'' 199-211. [http://dx.doi.org/10.3354/meps09777 doi:10.3354/meps09777].

Monk, J., D. Ierodiaconou, E. Harvey, A. Rattray, and V.L. Versace (2012). Are We Predicting the Actual or Apparent Distribution of Temperate Marine Fishes? ''PLoS One 7:'' e34558. [http://dx.doi.org/10.1371/journal.pone.0034558 doi:10.1371/journal.pone.0034558].

Mora, C., E.A. Treml, J. Roberts, K. Crosby, D. Roy, and D.P. Tittensor (2012). High connectivity among habitats precludes the relationship between dispersal and range size in tropical reef fishes. ''Ecography 35:'' 89-96. [http://dx.doi.org/10.1111/j.1600-0587.2011.06874.x doi:10.1111/j.1600-0587.2011.06874.x].

Neves, V.C., J. Bried, J. González-Solís, J.L. Roscales, and M.R. Clarke (2012). Feeding ecology and movements of the Barolo shearwater ''Puffinus baroli baroli'' in the Azores, NE Atlantic. ''Marine Ecology Progress Series 452:'' 269-285. [http://dx.doi.org/10.3354/meps09670 doi:10.3354/meps09670].

Payne M.C., C.A. Brown, D.A. Reusser, and H. Lee II (2012). Ecoregional Analysis of Nearshore Sea-Surface Temperature in the North Pacific. ''PLoS ONE 7:'' e30105. [http://dx.doi.org/10.1371/journal.pone.0030105 doi:10.1371/journal.pone.0030105].

Tamburello, L., L. Benedetti-Cecchi, G. Ghedini, T. Alestra, and F. Bulleri (2012). Variation in the structure of subtidal landscapes in the north-western Mediterranean Sea. ''Marine Ecology Progress Series 457:'' 29-41. [http://dx.doi.org/10.3354/meps09703 doi:10.3354/meps09703].

Tomlinson, C.J., J.E. Thornes, and C.J. Baker (2012). Derivation of Birmingham's summer surface urban heat island from MODIS satellite images. ''International Journal of Climatology 32:'' 214-224. [http://dx.doi.org/10.1002/joc.2261 doi:10.1002/joc.2261].

'''2011'''

Scheidat, M., A. Friedlaender, K.-H. Kock, L. Lehnert, O. Boebel, J. Roberts, and R. Williams (2011). Cetacean surveys in the Southern Ocean using icebreaker-supported helicopters. ''Polar Biology 34:'' 1513-1522. [http://dx.doi.org/10.1007/s00300-011-1010-5 doi:10.1007/s00300-011-1010-5].

Schick, R. S., P. N. Halpin, A. J. Read, D. L. Urban, B. D. Best, C. P. Good, J. J. Roberts, E. A. !LaBrecque, C. Dunn, L. P. Garrison, K. D. Hyrenbach, W. A. !McLellan, D. A. Pabst, D. L. Palka, and P. Stevick (2011). Community structure in pelagic marine mammals at large spatial scales. ''Marine Ecology Progress Series 434:'' 165–181. [http://dx.doi.org/10.3354/meps09183 doi:10.3354/meps09183].

Wooton, C. E. and B. Klinkenberg (2011). A landscape-level analysis of yellow-cedar decline in coastal British Columbia. ''Canadian Journal of Forest Research 41:'' 1638-1648 [http://dx.doi.org/10.1139/x11-061 doi:10.1139/x11-061].

Žydelis, R., R.L. Lewison, S.A. Shaffer, J.E. Moore, A.M. Boustany, J.J. Roberts, M. Sims, D.C. Dunn, B.D. Best, Y. Tremblay, M.A. Kappes, P.N. Halpin, D.P. Costa, and L.B. Crowder (2011). Dynamic habitat models: Using telemetry data to project fisheries bycatch. ''Proceedings of the Royal Society B 278:'' 3191-3200. [http://dx.doi.org/10.1098/rspb.2011.0330 doi:10.1098/rspb.2011.0330].

'''2010'''

Benedetti-Cecchi L., K. Iken, B. Konar, J. Cruz-Motta, A. Knowlton, et al. (2010). Spatial Relationships between Polychaete Assemblages and Environmental Variables over Broad Geographical Scales. ''PLoS ONE 5(9):'' e12946. 
[http://dx.doi.org/10.1371/journal.pone.0012946 doi:10.1371/journal.pone.0012946].  

Mugo, R., S. Saitoh, A. Nihira, and T. Kuroyama (2010). Habitat characteristics of skipjack tuna (''Katsuwonus pelamis'') in the western North Pacific: a remote sensing perspective. ''Fisheries Oceanography 19(5):'' 382-396. [http://dx.doi.org/10.1111/j.1365-2419.2010.00552.x doi:10.1111/j.1365-2419.2010.00552.x].

Young, M. A., P. J. Iampietro, R. G. Kvitek, and C. D. Garza (2010). Multivariate bathymetry-derived generalized linear model accurately predicts rockfish distribution on Cordell Bank, California, USA. ''Marine Ecology Progress Series 415:'' 247–261. [http://dx.doi.org/10.3354/meps08760 doi:10.3354/meps08760].

'''2009'''

Louzao, M., J. Bécares, B. Rodríguez, K. D. Hyrenbach, A. Ruiz